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| * Other tools - [[http://www.tarind.com/depgraph.html | py2depgraph]], [[http://pycallgraph.slowchop.com/ | pycallgraph]], [[http://pychecker.sourceforge.net/ | PyChecker]], [[http://divmod.org/trac/wiki/DivmodPyflakes | PyFlakes]], [[http://www.logilab.org/project/pylint | Pylint]], [[http://furius.ca/snakefood/ | Snakefood]], [[http://code.google.com/p/jrfonseca/wiki/XDot | XDot]]. | * Other tools - [[http://pypi.python.org/pypi/pep8/ | pep8]], [[http://www.tarind.com/depgraph.html | py2depgraph]], [[http://pycallgraph.slowchop.com/ | pycallgraph]], [[http://pychecker.sourceforge.net/ | PyChecker]], [[http://divmod.org/trac/wiki/DivmodPyflakes | PyFlakes]], [[http://www.logilab.org/project/pylint | Pylint]], [[http://furius.ca/snakefood/ | Snakefood]], [[http://code.google.com/p/jrfonseca/wiki/XDot | XDot]]. |
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| * [[http://wiki.sagemath.org/devel/FunctionalProgramming | Python Functional Programming for Mathematicians]] by M. Nguyen. | |
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| * [[http://abel.ee.ucla.edu/cvxopt/ | CVXOPT]] - Convex optimization - [[http://abel.ee.ucla.edu/cvxopt/userguide/index.html | docs]], [[http://abel.ee.ucla.edu/cvxopt/examples/index.html | examples]]. * [[http://newcenturycomputers.net/projects/gdmodule.html | GDmodule]] - Image graphics - [[http://www.libgd.org/Main_Page | library]]. * [[http://ghmm.org/ | GHMM]] - Hidden Markov models - [[http://ghmm.org/Pydoc/index.html | docs]]. * [[http://ipython.scipy.org/moin/ | IPython]] - Enhanced interpreter - [[http://ipython.scipy.org/moin/Documentation | docs]]. * [[http://jinja.pocoo.org/ | Jinja]] - Template engine - [[http://jinja.pocoo.org/1/documentation/ | v1 docs]], [[http://jinja.pocoo.org/2/documentation/ | v2 docs]]. * [[http://matplotlib.sourceforge.net/ | matplotlib]] - 2D plotting - [[http://matplotlib.sourceforge.net/contents.html | docs]], [[http://matplotlib.sourceforge.net/examples/index.html | examples]], [[http://matplotlib.sourceforge.net/gallery.html | gallery]]. * [[http://mercurial.selenic.com/wiki/ | Mercurial / hg]] - Source control manager - [[http://hgbook.red-bean.com/read/ | book]], [[http://mercurial.selenic.com/wiki/UsingExtensions | extensions]]. * [[http://moinmo.in/ | MoinMoin]] - Wiki engine - [[http://moinmo.in/MoinMoinExtensions | extensions]]. * [[http://networkx.lanl.gov/ | NetworkX]] - Complex networks and graphs - [[http://networkx.lanl.gov/contents.html | docs]]. * [[http://numpy.scipy.org/ | NumPy]] - N-dimensional arrays and routines - [[http://docs.scipy.org/doc/ | docs]]. * [[http://pexpect.sourceforge.net/pexpect.html | Pexpect]] - Spawn and control processes. * [[http://www.amk.ca/python/code/crypto.html | PyCrypto]] - Cryptographic algorithms and protocols - [[http://www.dlitz.net/software/pycrypto/ | current]]. * [[http://pygments.org/ | Pygments]] - Syntax highlighter - [[http://pygments.org/docs/ | docs]]. * [[http://pynac.sagemath.org/ | Pynac]] - Symbolic manipulation - [[http://www.ginac.de/ | GiNaC]]. * [[http://www.pythonware.com/products/pil/ | Python Imaging Library / PIL]] - Image processing - [[http://www.pythonware.com/library/pil/handbook/index.htm | docs]]. * [[http://rpy.sourceforge.net/ | RPy]] - Statistical computing - [[http://rpy.sourceforge.net/documentation.html | docs]]. * [[http://www.scipy.org/ | SciPy]] - Numerical algorithms and routines - [[http://docs.scipy.org/doc/ | docs]]. * [[http://sphinx.pocoo.org/ | Sphinx]] - Documentation generator - [[http://sphinx.pocoo.org/contents.html | docs]]. * [[http://www.sqlalchemy.org/ | SQLAlchemy]] - Database toolkit - [[http://www.sqlalchemy.org/docs/05/index.html | docs]]. * [[http://code.google.com/p/sympy/ | SymPy]] - Symbolic mathematics - [[http://docs.sympy.org/ | docs]], [[http://wiki.sympy.org/wiki/Main_Page | wiki]]. * [[http://twistedmatrix.com/trac/ | Twisted]] - Networking engine - [[http://twistedmatrix.com/trac/wiki/Documentation | docs]]. * [[http://www.zope.org/Products/StandaloneZODB | ZODB]] - Object database. |
see https://doc.sagemath.org/html/en/reference/spkg/ |
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| * [[http://biopython.org/wiki/Main_Page | Biopython]] - Bioinformatics - [[http://www.biopython.org/wiki/Documentation | docs]]. | |
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| * [[http://igraph.sourceforge.net/index.html | igraph]] - Graph theory and network analysis - [[http://igraph.sourceforge.net/documentation.html | docs]]. | |
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| * [[http://www.tornadoweb.org/ | Tornado]] - Web server and framework - [[http://www.tornadoweb.org/documentation | docs]]. |
Python / Cython resources
General
Python - docs, FAQs, wiki, language, library, modules, packages, quickref, python-dev, repo, tracker.
Library tools - errno, functools, gettext, glob, inspect, itertools, locale, logging, multiprocessing, optparse, os, os.path, pdb, pickle, re, shutil, string, subprocess, sys, tabnanny, threading, time, timeit, trace, traceback, urllib2.
Other tools - pep8, py2depgraph, pycallgraph, PyChecker, PyFlakes, Pylint, Snakefood, XDot.
Tutorials, books, etc.
Dive into Python by M. Pilgrim.
How to Think Like a Computer Scientist: Learning with Python by J. Elkener, A. B. Downey, and C. Meyers.
Python for Software Design by A. B. Downey.
Articles, HOWTOs, etc.
decorator by M. Simionato.
Functional Programming HOWTO by A. M. Kuchling.
Python Functional Programming for Mathematicians by M. Nguyen.
Regular Expression HOWTO by A. M. Kuchling.
Static Code Analyzers by D. Hellmann.
Packages included in Sage
see https://doc.sagemath.org/html/en/reference/spkg/
Other packages
Google App Engine - Web framework - docs.
PyDSTool - Dynamical systems.
PyDy - Newtonian mechanics.
Pyjamas - Web and desktop framework.
PyNIfTI - Medical imaging.
VPython - Real-time 3D graphics and animation - Visual docs.