Size: 4729
Comment: NetworkX added.
|
Size: 7587
Comment: Added PyNIfTI. Maybe we should make a separate section for optional or experimental spkgs.
|
Deletions are marked like this. | Additions are marked like this. |
Line 6: | Line 6: |
* Library tools - [[http://docs.python.org/library/errno.html | errno]], [[http://docs.python.org/library/functools.html | functools]], [[http://docs.python.org/library/gettext.html | gettext]], [[http://docs.python.org/library/glob.html | glob]], [[http://docs.python.org/library/inspect.html | inspect]], [[http://docs.python.org/library/itertools.html | itertools]], [[http://docs.python.org/library/locale.html | locale]], [[http://docs.python.org/library/logging.html | logging]], [[http://docs.python.org/library/multiprocessing.html | multiprocessing]], [[http://docs.python.org/library/optparse.html | optparse]], [[http://docs.python.org/library/os.html | os]], [[http://docs.python.org/library/os.path.html | os.path]], [[http://docs.python.org/library/pdb.html | pdb]], [[http://docs.python.org/library/pickle.html | pickle]], [[http://docs.python.org/library/re.html | re]], [[http://docs.python.org/library/shutil.html | shutil]], [[http://docs.python.org/library/string.html | string]], [[http://docs.python.org/library/subprocess.html | subprocess]], [[http://docs.python.org/library/sys.html | sys]], [[http://docs.python.org/library/tabnanny.html | tabnanny]], [[http://docs.python.org/library/threading.html | threading]], [[http://docs.python.org/library/time.html | time]], [[http://docs.python.org/library/timeit.html | timeit]], [[http://docs.python.org/library/trace.html | trace]], [[http://docs.python.org/library/traceback.html | traceback]], [[http://docs.python.org/library/urllib2.html | urllib2]]. * Other tools - [[http://www.tarind.com/depgraph.html | py2depgraph]], [[http://pycallgraph.slowchop.com/ | pycallgraph]], [[http://pychecker.sourceforge.net/ | PyChecker]], [[http://divmod.org/trac/wiki/DivmodPyflakes | PyFlakes]], [[http://www.logilab.org/project/pylint | Pylint]], [[http://furius.ca/snakefood/ | Snakefood]], [[http://code.google.com/p/jrfonseca/wiki/XDot | XDot]]. |
|
Line 18: | Line 23: |
* [[http://docutils.sourceforge.net/rst.html | reStructuredText / reST]]. | |
Line 19: | Line 25: |
== Packages included with Sage == | == Packages included in Sage == |
Line 26: | Line 32: |
* [[http://mercurial.selenic.com/wiki/ | Mercurial (hg)]] - Source control manager - [[http://hgbook.red-bean.com/read/ | book]], [[http://mercurial.selenic.com/wiki/UsingExtensions | extensions]]. | * [[http://mercurial.selenic.com/wiki/ | Mercurial / hg]] - Source control manager - [[http://hgbook.red-bean.com/read/ | book]], [[http://mercurial.selenic.com/wiki/UsingExtensions | extensions]]. |
Line 28: | Line 34: |
* [[http://networkx.lanl.gov/ | NetworkX]] - Complex networks and graphs [[http://networkx.lanl.gov/contents.html | docs]]. | * [[http://networkx.lanl.gov/ | NetworkX]] - Complex networks and graphs - [[http://networkx.lanl.gov/contents.html | docs]]. |
Line 31: | Line 37: |
* [[http://www.amk.ca/python/code/crypto.html | PyCrypto]] - Cryptographic algorithms and protocols - [[http://www.dlitz.net/software/pycrypto/ | current]]. | |
Line 42: | Line 49: |
* [[http://biopython.org/wiki/Main_Page | Biopython]] - Bioinformatics - [[http://www.biopython.org/wiki/Documentation | docs]]. | |
Line 44: | Line 52: |
* [[http://igraph.sourceforge.net/index.html | igraph]] - Graph theory and network analysis - [[http://igraph.sourceforge.net/documentation.html | docs]]. * [[http://www.pythonware.com/products/pil/ | Python Imaging Library / PIL]] - Image processing - [[http://www.pythonware.com/library/pil/handbook/index.htm | docs]]. |
|
Line 45: | Line 55: |
* [[http://niftilib.sourceforge.net/pynifti/ | PyNIfTI]] - Medical imaging. * [[http://www.vips.ecs.soton.ac.uk/index.php?title=VIPS | VIPS]] - Image processing - [[http://www.vips.ecs.soton.ac.uk/index.php?title=Documentation | docs]]. |
Python / Cython resources
General
Python - docs, FAQs, wiki, language, library, modules, packages, quickref, python-dev, repo, tracker.
Library tools - errno, functools, gettext, glob, inspect, itertools, locale, logging, multiprocessing, optparse, os, os.path, pdb, pickle, re, shutil, string, subprocess, sys, tabnanny, threading, time, timeit, trace, traceback, urllib2.
Other tools - py2depgraph, pycallgraph, PyChecker, PyFlakes, Pylint, Snakefood, XDot.
Tutorials, books, etc.
Dive into Python by M. Pilgrim.
How to Think Like a Computer Scientist: Learning with Python by J. Elkener, A. B. Downey, and C. Meyers.
Python for Software Design by A. B. Downey.
Articles, HOWTOs, etc.
decorator by M. Simionato.
Functional Programming HOWTO by A. M. Kuchling.
Regular Expression HOWTO by A. M. Kuchling.
Packages included in Sage
matplotlib - 2D plotting - docs, examples, gallery.
Mercurial / hg - Source control manager - book, extensions.
MoinMoin - Wiki engine - extensions.
Pexpect - Spawn and control processes.
PyCrypto - Cryptographic algorithms and protocols - current.
SQLAlchemy - Database toolkit - docs.
ZODB - Object database.
Other packages
Google App Engine - Web framework - docs.
Python Imaging Library / PIL - Image processing - docs.
Pyjamas - Web and desktop framework.
PyNIfTI - Medical imaging.