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| * [[http://biopython.org/wiki/Main_Page | Biopython]] - Bioinformatics - [[http://www.biopython.org/wiki/Documentation | docs]]. | |
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| * [[http://igraph.sourceforge.net/index.html | igraph]] - Graph theory and network analysis - [[http://igraph.sourceforge.net/documentation.html | docs]]. |
Python / Cython resources
General
Python - docs, FAQs, wiki, language, library, modules, packages, quickref, python-dev, repo, tracker.
Utilities - errno, functools, gettext, glob, inspect, itertools, locale, logging, multiprocessing, optparse, os, os.path, pdb, pickle, re, shutil, string, subprocess, sys, threading, time, timeit, trace, traceback, urllib2.
Tutorials, books, etc.
Dive into Python by M. Pilgrim.
How to Think Like a Computer Scientist: Learning with Python by J. Elkener, A. B. Downey, and C. Meyers.
Python for Software Design by A. B. Downey.
Articles, HOWTOs, etc.
decorator by M. Simionato.
Functional Programming HOWTO by A. M. Kuchling.
Regular Expression HOWTO by A. M. Kuchling.
Packages included in Sage
matplotlib - 2D plotting - docs, examples, gallery.
Mercurial (hg) - Source control manager - book, extensions.
MoinMoin - Wiki engine - extensions.
Pexpect - Spawn and control processes.
PyCrypto - Cryptographic algorithms and protocols.
SQLAlchemy - Database toolkit - docs.
ZODB - Object database.